PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000196982
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family MYB
Protein Properties Length: 364aa    MW: 39240.9 Da    PI: 8.3556
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000196982genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.24e-185097148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT+eEdell++++k+ G g+W+t +++ g+ R++k+c++rw +yl
    MDP0000196982 50 RGPWTPEEDELLANYIKKEGEGRWRTLPKRAGLLRCGKSCRLRWMNYL 97
                     89******************************99************97 PP

2Myb_DNA-binding44.24.4e-14108148648
                      HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      ++E++l+++++++lG++ W++Ia +++ gRt++++k +w+++l
    MDP0000196982 108 PDEEDLILRLHRLLGNR-WSLIAGRIP-GRTDNEIKXYWNTHL 148
                      89***************.*********.************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.7E-224199IPR009057Homeodomain-like
PROSITE profilePS5129416.8184597IPR017930Myb domain
SuperFamilySSF466893.01E-2847144IPR009057Homeodomain-like
SMARTSM007177.9E-144999IPR001005SANT/Myb domain
PfamPF002494.3E-165097IPR001005SANT/Myb domain
CDDcd001671.01E-115297No hitNo description
PROSITE profilePS5129423.66598152IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.6E-23100153IPR009057Homeodomain-like
SMARTSM007171.4E-12102150IPR001005SANT/Myb domain
CDDcd001675.31E-11108148No hitNo description
PfamPF002496.7E-13108148IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MRNPSSSSKA AAAASAKMQT TITASSSSSK AAGVAGGTKT PCCAKVGLKR GPWTPEEDEL  60
LANYIKKEGE GRWRTLPKRA GLLRCGKSCR LRWMNYLRPS VKRGQIAPDE EDLILRLHRL  120
LGNRWSLIAG RIPGRTDNEI KXYWNTHLSK KLISQGIDPR THKPLNXDHH SAADDXDVDN  180
TNKSTAVASS SKANDRFSNP NPSPPSDRLV HKEGDPNNSR NDGNIAIADH DLGTIVXGFA  240
NMITSINNPD ASSSAAATGT LSLRSNNSHG GVLLXGGGNE EDDVFSSFLN SLINEDPFPG  300
QHQLQQVLQN GNVSAHAAAA RSENLPLIXM TSTTAPSTFG WESAVLMSSA FIQNDHQXVN  360
DQTE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A9e-25481525108B-MYB
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.169090.0fruit
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ0201120.0KJ020112.1 Malus hybrid cultivar MYB12a protein (MYB12a) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008349410.10.0PREDICTED: LOW QUALITY PROTEIN: transcription repressor MYB5-like
SwissprotQ388502e-83MYB5_ARATH; Transcription repressor MYB5
TrEMBLX2EXK40.0X2EXK4_9R
STRINGVIT_06s0004g00570.t011e-101(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF38943064
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.15e-82myb domain protein 5